PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI09G08020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 359aa    MW: 37466.4 Da    PI: 5.2887
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI09G08020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260117.58.1e-37691681100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      aCaaCk++rrkC++dC+la+yfpa+++++f n+h+lFG+s+++k+l+++p+e + dam++l++eA+ara+dPv Ga++v+ +l +q+e l+ael
  ORUFI09G08020.1  69 ACAACKYQRRKCNADCPLARYFPADEQRRFLNAHHLFGVSKIQKTLRDTPPELHADAMQALTFEANARASDPVGGAARVVVELCRQYEMLHAEL 162
                      7********************************************************************************************* PP

           DUF260  95 allkee 100
                      a+++++
  ORUFI09G08020.1 163 AAVQHH 168
                      ***997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.7968169IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-3369166IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MTASSSTTNS SSSVSTADTS SSNPPPQHAL HRQHIASSSA SSGGGGAAAP LPPRAPPRVG  60
GGGVGQSQAC AACKYQRRKC NADCPLARYF PADEQRRFLN AHHLFGVSKI QKTLRDTPPE  120
LHADAMQALT FEANARASDP VGGAARVVVE LCRQYEMLHA ELAAVQHHLK LCRQQHAAAA  180
AAAANDPLVA NVDPLADPAA EMLFAGAVVP NQNDDAMVDA FYADQQTAGD GDQEQYLVKD  240
EALAAQPPPQ QPYEYLNYGT AGDEGSSHAW YTGNGGDADA SPPMGLSDQL QQCQIGAAPP  300
FDVKPELPAT MEHGGSVFVE QPEQKILPAA GSSSSAAAHC QLELGCSSNA WKVGTHVIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056750.0AP005675.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1001_G09.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611163.10.0PREDICTED: LOB domain-containing protein 19, partial
TrEMBLA0A0E0QQE90.0A0A0E0QQE9_ORYRU; Uncharacterized protein
STRINGLOC_Os09g19950.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP182931010
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72980.12e-25LOB domain-containing protein 7